STRINGSTRING
Psed_4680 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4680" - Hypothetical protein in Pseudonocardia dioxanivorans
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4680Hypothetical protein (136 aa)    
Predicted Functional Partners:
Psed_4679
Class V aminotransferase (343 aa)
   
        0.671
Psed_3430
Riboflavin biosynthesis protein RibD (385 aa)
              0.526
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) (270 aa)
   
        0.420
Psed_6318
Amidohydrolase (366 aa)
              0.412
Psed_6317
Amidohydrolase (519 aa)
              0.412
Psed_5052
Amidohydrolase (331 aa)
              0.412
Psed_4983
Aminocarboxymuconate-semialdehyde decarboxylase (330 aa)
              0.412
Psed_4288
Amidohydrolase (327 aa)
              0.412
Psed_3720
Amidohydrolase (311 aa)
              0.412
Psed_2923
Amidohydrolase (292 aa)
              0.412
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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