STRINGSTRING
Psed_4687 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4687" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4687Hypothetical protein (248 aa)    
Predicted Functional Partners:
Psed_1993
ATP-dependent DNA helicase RecQ (701 aa)
 
          0.611
Psed_4688
Polysaccharide deacetylase (372 aa)
              0.527
Psed_0952
Hypothetical protein (428 aa)
   
          0.492
Psed_1024
Hypothetical protein (197 aa)
   
          0.449
Psed_0055
Non-ribosomal peptide synthetase domain-containing protein (1333 aa)
   
          0.441
Psed_1912
Hypothetical protein (257 aa)
   
          0.440
Psed_5182
Lipoprotein LpqB, beta-propeller domain-containing protein (570 aa)
   
          0.439
Psed_3357
Hypothetical protein (288 aa)
   
          0.417
Psed_0669
Hypothetical protein (316 aa)
   
          0.417
Psed_5936
Alkyl hydroperoxide reductase (222 aa)
              0.412
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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