STRINGSTRING
Psed_4706 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4706" - Transmembrane protein in Pseudonocardia dioxanivorans
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4706Transmembrane protein (133 aa)    
Predicted Functional Partners:
Psed_4707
Penicillin-binding protein transpeptidase (621 aa)
              0.655
Psed_5836
Hypothetical protein (98 aa)
   
          0.648
Psed_0282
Esterase (427 aa)
   
          0.615
Psed_4705
Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed (352 aa)
              0.569
Psed_4704
Pyridoxamine 5’-phosphate oxidase-related FMN-binding protein (193 aa)
              0.554
Psed_5635
Xylose isomerase domain-containing protein (280 aa)
   
          0.503
Psed_4708
GCN5-like N-acetyltransferase (277 aa)
              0.483
Psed_4438
Patatin (278 aa)
   
          0.463
Psed_5085
Esterase (385 aa)
   
          0.440
Psed_3928
Major facilitator superfamily protein (434 aa)
   
          0.430
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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