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Psed_4707 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4707" - Penicillin-binding protein transpeptidase in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4707Penicillin-binding protein transpeptidase (621 aa)    
Predicted Functional Partners:
Psed_4861
Cell shape determining protein MreB/Mrl (332 aa)
 
 
  0.937
Psed_2805
Cell division protein FtsW (457 aa)
 
  0.925
Psed_0056
Cell division protein FtsW (595 aa)
 
 
  0.923
Psed_6492
Peptidoglycan glycosyltransferase (779 aa)
 
 
  0.905
Psed_0117
Cell cycle protein (487 aa)
 
  0.880
Psed_3637
Peptidoglycan glycosyltransferase (687 aa)
 
 
  0.880
Psed_2808
Polypeptide-transport-associated domain-containing protein (460 aa)
   
 
  0.871
Psed_2439
Peptidoglycan glycosyltransferase (717 aa)
 
 
  0.853
Psed_3618
Glycosyl transferase protein (711 aa)
 
 
  0.800
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation (476 aa)
 
 
  0.788
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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