node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Psed_0002 | Psed_3272 | Psed_0002 | Psed_3272 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | KEGG: amd:AMED_3255 ATP-dependent DNA ligase; TIGRFAM: DNA polymerase LigD, polymerase domain; DNA ligase D, 3'-phosphoesterase domain; PFAM: DNA primase, small subunit; DNA ligase, ATP-dependent, central. | 0.802 |
Psed_0002 | Psed_3283 | Psed_0002 | Psed_3283 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 5'-3' exonuclease, resolvase-like domain-containing protein; KEGG: ami:Amir_2257 5'-3' exonuclease; PFAM: 5'-3' exonuclease, alpha-helical arch, N-terminal; 5'-3' exonuclease, SAM-fold domain; SMART: 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2. | 0.936 |
Psed_0002 | Psed_4718 | Psed_0002 | Psed_4718 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | PFAM: DNA ligase, ATP-dependent, central; DNA ligase, ATP-dependent, C-terminal; KEGG: mpa:MAP0341 ATP-dependent DNA ligase. | 0.795 |
Psed_0002 | ligA | Psed_0002 | Psed_1788 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. | 0.480 |
Psed_0002 | polA | Psed_0002 | Psed_3588 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.997 |
Psed_0303 | Psed_4718 | Psed_0303 | Psed_4718 | KEGG: mau:Micau_5172 DNA polymerase LigD polymerase subunit; TIGRFAM: DNA polymerase LigD, polymerase domain; PFAM: DNA primase, small subunit. | PFAM: DNA ligase, ATP-dependent, central; DNA ligase, ATP-dependent, C-terminal; KEGG: mpa:MAP0341 ATP-dependent DNA ligase. | 0.850 |
Psed_0303 | ku | Psed_0303 | Psed_0327 | KEGG: mau:Micau_5172 DNA polymerase LigD polymerase subunit; TIGRFAM: DNA polymerase LigD, polymerase domain; PFAM: DNA primase, small subunit. | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.862 |
Psed_0303 | ku-2 | Psed_0303 | Psed_2054 | KEGG: mau:Micau_5172 DNA polymerase LigD polymerase subunit; TIGRFAM: DNA polymerase LigD, polymerase domain; PFAM: DNA primase, small subunit. | DNA repair protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.863 |
Psed_2901 | Psed_3283 | Psed_2901 | Psed_3283 | KEGG: sen:SACE_1849 DNA ligase (ATP); TIGRFAM: DNA polymerase LigD, polymerase domain; PFAM: DNA primase, small subunit. | 5'-3' exonuclease, resolvase-like domain-containing protein; KEGG: ami:Amir_2257 5'-3' exonuclease; PFAM: 5'-3' exonuclease, alpha-helical arch, N-terminal; 5'-3' exonuclease, SAM-fold domain; SMART: 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2. | 0.448 |
Psed_2901 | Psed_4718 | Psed_2901 | Psed_4718 | KEGG: sen:SACE_1849 DNA ligase (ATP); TIGRFAM: DNA polymerase LigD, polymerase domain; PFAM: DNA primase, small subunit. | PFAM: DNA ligase, ATP-dependent, central; DNA ligase, ATP-dependent, C-terminal; KEGG: mpa:MAP0341 ATP-dependent DNA ligase. | 0.947 |
Psed_2901 | ku | Psed_2901 | Psed_0327 | KEGG: sen:SACE_1849 DNA ligase (ATP); TIGRFAM: DNA polymerase LigD, polymerase domain; PFAM: DNA primase, small subunit. | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.874 |
Psed_2901 | ku-2 | Psed_2901 | Psed_2054 | KEGG: sen:SACE_1849 DNA ligase (ATP); TIGRFAM: DNA polymerase LigD, polymerase domain; PFAM: DNA primase, small subunit. | DNA repair protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.873 |
Psed_3272 | Psed_0002 | Psed_3272 | Psed_0002 | KEGG: amd:AMED_3255 ATP-dependent DNA ligase; TIGRFAM: DNA polymerase LigD, polymerase domain; DNA ligase D, 3'-phosphoesterase domain; PFAM: DNA primase, small subunit; DNA ligase, ATP-dependent, central. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.802 |
Psed_3272 | Psed_3283 | Psed_3272 | Psed_3283 | KEGG: amd:AMED_3255 ATP-dependent DNA ligase; TIGRFAM: DNA polymerase LigD, polymerase domain; DNA ligase D, 3'-phosphoesterase domain; PFAM: DNA primase, small subunit; DNA ligase, ATP-dependent, central. | 5'-3' exonuclease, resolvase-like domain-containing protein; KEGG: ami:Amir_2257 5'-3' exonuclease; PFAM: 5'-3' exonuclease, alpha-helical arch, N-terminal; 5'-3' exonuclease, SAM-fold domain; SMART: 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2. | 0.748 |
Psed_3272 | Psed_4718 | Psed_3272 | Psed_4718 | KEGG: amd:AMED_3255 ATP-dependent DNA ligase; TIGRFAM: DNA polymerase LigD, polymerase domain; DNA ligase D, 3'-phosphoesterase domain; PFAM: DNA primase, small subunit; DNA ligase, ATP-dependent, central. | PFAM: DNA ligase, ATP-dependent, central; DNA ligase, ATP-dependent, C-terminal; KEGG: mpa:MAP0341 ATP-dependent DNA ligase. | 0.831 |
Psed_3272 | ku | Psed_3272 | Psed_0327 | KEGG: amd:AMED_3255 ATP-dependent DNA ligase; TIGRFAM: DNA polymerase LigD, polymerase domain; DNA ligase D, 3'-phosphoesterase domain; PFAM: DNA primase, small subunit; DNA ligase, ATP-dependent, central. | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.916 |
Psed_3272 | ku-2 | Psed_3272 | Psed_2054 | KEGG: amd:AMED_3255 ATP-dependent DNA ligase; TIGRFAM: DNA polymerase LigD, polymerase domain; DNA ligase D, 3'-phosphoesterase domain; PFAM: DNA primase, small subunit; DNA ligase, ATP-dependent, central. | DNA repair protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.916 |
Psed_3272 | polA | Psed_3272 | Psed_3588 | KEGG: amd:AMED_3255 ATP-dependent DNA ligase; TIGRFAM: DNA polymerase LigD, polymerase domain; DNA ligase D, 3'-phosphoesterase domain; PFAM: DNA primase, small subunit; DNA ligase, ATP-dependent, central. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.872 |
Psed_3283 | Psed_0002 | Psed_3283 | Psed_0002 | 5'-3' exonuclease, resolvase-like domain-containing protein; KEGG: ami:Amir_2257 5'-3' exonuclease; PFAM: 5'-3' exonuclease, alpha-helical arch, N-terminal; 5'-3' exonuclease, SAM-fold domain; SMART: 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.936 |
Psed_3283 | Psed_2901 | Psed_3283 | Psed_2901 | 5'-3' exonuclease, resolvase-like domain-containing protein; KEGG: ami:Amir_2257 5'-3' exonuclease; PFAM: 5'-3' exonuclease, alpha-helical arch, N-terminal; 5'-3' exonuclease, SAM-fold domain; SMART: 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2. | KEGG: sen:SACE_1849 DNA ligase (ATP); TIGRFAM: DNA polymerase LigD, polymerase domain; PFAM: DNA primase, small subunit. | 0.448 |