STRINGSTRING
Psed_4743 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4743" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4743Hypothetical protein (71 aa)    
Predicted Functional Partners:
Psed_4742
Clp domain-containing protein (189 aa)
              0.863
Psed_1583
F420-dependent protein (130 aa)
   
          0.669
Psed_4715
Hypothetical protein (212 aa)
   
          0.662
Psed_6589
Hypothetical protein (272 aa)
   
          0.641
Psed_5544
Hypothetical protein (185 aa)
   
          0.630
Psed_0720
Hypothetical protein (223 aa)
   
          0.614
Psed_3336
Hypothetical protein (179 aa)
   
          0.605
rpsP
30S ribosomal protein S16 (147 aa)
              0.557
Psed_4745
Hypothetical protein (79 aa)
              0.557
rimM
Ribosome maturation factor rimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes (216 aa)
              0.557
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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