STRINGSTRING
Psed_4802 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4802" - Alpha amylase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4802Alpha amylase (519 aa)    
Predicted Functional Partners:
Psed_1728
Aminoglycoside phosphotransferase (467 aa)
 
  0.976
Psed_1731
Alpha-glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties (851 aa)
   
  0.972
Psed_2879
Malto-oligosyltrehalose synthase (813 aa)
 
 
  0.962
Psed_0544
4-alpha-glucanotransferase (647 aa)
 
 
  0.952
Psed_5017
Fructokinase (320 aa)
 
 
  0.943
Psed_1729
Trehalose synthase (587 aa)
   
   
 
0.923
Psed_5193
Amino acid permease (509 aa)
   
  0.847
Psed_6427
Amino acid permease (500 aa)
   
  0.847
Psed_4562
Amino acid permease (429 aa)
   
  0.847
Psed_3792
Amino acid permease (439 aa)
   
  0.847
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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