STRINGSTRING
Psed_4812 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4812" - Integrase protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4812Integrase protein (506 aa)    
Predicted Functional Partners:
Psed_0874
Integrase protein (397 aa)
   
          0.631
Psed_0856
DNA translocase FtsK (678 aa)
   
          0.597
Psed_1127
DNA translocase FtsK (749 aa)
   
          0.586
Psed_5234
Integrase protein (408 aa)
   
          0.578
Psed_4811
N-6 DNA methylase (585 aa)
              0.538
Psed_2820
Hypothetical protein (273 aa)
   
          0.518
Psed_5778
DNA translocase FtsK (672 aa)
   
          0.515
Psed_0035
TrwC relaxase (1465 aa)
   
          0.505
Psed_4380
TrwC relaxase (1457 aa)
   
          0.481
Psed_3299
Molybdopterin-guanine dinucleotide biosynthesis protein A-like protein (298 aa)
   
          0.466
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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