STRINGSTRING
Psed_4862 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4862" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4862Hypothetical protein (540 aa)    
Predicted Functional Partners:
Psed_4861
Cell shape determining protein MreB/Mrl (332 aa)
              0.697
Psed_5084
Major facilitator superfamily protein (568 aa)
   
          0.528
Psed_0054
Zinc/iron permease (278 aa)
   
          0.504
Psed_4834
Penicillinase repressor (135 aa)
   
          0.498
Psed_5865
Major facilitator superfamily protein (579 aa)
   
          0.494
Psed_3678
Squalene-associated FAD-dependent desaturase (477 aa)
   
          0.469
Psed_4002
Major facilitator superfamily protein (866 aa)
   
          0.465
Psed_5736
Transglycosylase-like domain-containing protein (202 aa)
   
          0.437
Psed_5992
Ribonuclease BN (359 aa)
   
          0.430
Psed_4498
Hypothetical protein (276 aa)
   
          0.427
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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