STRINGSTRING
Psed_4879 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4879" - MarR family transcriptional regulator in Pseudonocardia dioxanivorans
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4879MarR family transcriptional regulator (159 aa)    
Predicted Functional Partners:
Psed_3046
Regulatory protein (365 aa)
 
        0.772
Psed_3801
Regulatory protein (361 aa)
 
        0.767
Psed_6002
Regulatory protein (356 aa)
 
        0.757
Psed_3240
ABC transporter substrate-binding protein (474 aa)
 
          0.541
Psed_5955
ABC transporter substrate-binding protein (478 aa)
 
        0.508
Psed_4943
TetR family transcriptional regulator (214 aa)
 
     
  0.475
gyrA
DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner (839 aa)
     
 
  0.474
Psed_4878
Hypothetical protein (308 aa)
 
        0.470
Psed_3340
EmrB/QacA subfamily drug resistance transporter (501 aa)
         
  0.451
Psed_2661
EmrB/QacA subfamily drug resistance transporter (532 aa)
         
  0.451
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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