STRINGSTRING
Psed_4932 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4932" - FR47 domain-containing protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4932FR47 domain-containing protein (242 aa)    
Predicted Functional Partners:
Psed_4931
ABC transporter substrate-binding protein (367 aa)
 
          0.866
Psed_4929
Polar amino acid ABC transporter permease (336 aa)
 
          0.696
Psed_4930
Sulfate-transporting ATPase (278 aa)
              0.628
Psed_4928
Nitrilotriacetate monooxygenase FMN-dependent oxidoreductase (457 aa)
 
          0.522
Psed_4926
Oxygenase (334 aa)
          0.458
Psed_5034
Glycosyl transferase protein (707 aa)
   
          0.457
Psed_0846
Winged helix family transcriptional regulator (1073 aa)
   
          0.452
Psed_3689
GCN5-like N-acetyltransferase (199 aa)
   
          0.448
Psed_4933
Hypothetical protein (270 aa)
 
          0.445
Psed_5021
CHAD domain-containing protein (506 aa)
   
          0.437
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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