STRINGSTRING
Psed_4933 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4933" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4933Hypothetical protein (270 aa)    
Predicted Functional Partners:
Psed_5838
Nitrilotriacetate monooxygenase FMN-dependent oxidoreductase (454 aa)
 
          0.565
Psed_4019
Hypothetical protein (112 aa)
   
          0.525
Psed_4928
Nitrilotriacetate monooxygenase FMN-dependent oxidoreductase (457 aa)
 
          0.514
Psed_4931
ABC transporter substrate-binding protein (367 aa)
 
          0.514
Psed_0241
Hypothetical protein (121 aa)
   
          0.510
Psed_5837
FMNH2-utilizing oxygenase (397 aa)
 
          0.457
Psed_4932
FR47 domain-containing protein (242 aa)
 
          0.445
Psed_4516
Hypothetical protein (650 aa)
 
          0.442
Psed_4926
Oxygenase (334 aa)
 
          0.429
Psed_5494
TetR family transcriptional regulator (265 aa)
   
          0.417
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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