STRINGSTRING
Psed_4944 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4944" - Major facilitator superfamily protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4944Major facilitator superfamily protein (820 aa)    
Predicted Functional Partners:
Psed_2616
EmrB/QacA subfamily drug resistance transporter (548 aa)
   
          0.778
Psed_1803
Major facilitator superfamily protein (502 aa)
   
          0.778
Psed_5984
Major facilitator superfamily protein (531 aa)
   
          0.777
Psed_2473
Major facilitator superfamily protein (589 aa)
 
          0.774
Psed_1580
Major facilitator superfamily protein (504 aa)
 
          0.774
Psed_5084
Major facilitator superfamily protein (568 aa)
   
          0.764
Psed_3036
Major facilitator superfamily protein (481 aa)
   
          0.601
Psed_4945
HxlR family transcriptional regulator (186 aa)
              0.593
Psed_3328
Major facilitator superfamily protein (367 aa)
   
          0.544
Psed_1190
Major facilitator superfamily protein (458 aa)
   
          0.422
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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