STRINGSTRING
Psed_5008 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5008" - TetR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5008TetR family transcriptional regulator (223 aa)    
Predicted Functional Partners:
Psed_5885
TetR family transcriptional regulator (198 aa)
   
          0.547
Psed_4943
TetR family transcriptional regulator (214 aa)
   
          0.543
Psed_1295
TetR family transcriptional regulator (205 aa)
   
          0.496
Psed_1568
TetR family transcriptional regulator (262 aa)
   
          0.477
Psed_4296
TetR family transcriptional regulator (200 aa)
   
          0.468
Psed_5936
Alkyl hydroperoxide reductase (222 aa)
 
          0.462
Psed_6397
TetR family transcriptional regulator (207 aa)
   
          0.430
Psed_2695
TetR family transcriptional regulator (190 aa)
   
          0.417
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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