STRINGSTRING
Psed_5016 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5016" - Polyketide cyclase/dehydrase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5016Polyketide cyclase/dehydrase (188 aa)    
Predicted Functional Partners:
Psed_5017
Fructokinase (320 aa)
              0.859
Psed_1577
Glyoxalase/bleomycin resistance protein/dioxygenase (133 aa)
   
          0.714
Psed_5015
Cobalamin synthesis protein P47K (334 aa)
 
          0.701
Psed_1018
Family 2 glycosyl transferase (316 aa)
   
          0.685
Psed_6199
Molecular chaperone DnaJ (405 aa)
   
          0.661
Psed_2007
Hypothetical protein (259 aa)
   
          0.647
Psed_3127
Ribonuclease BN (409 aa)
   
          0.619
Psed_0556
Beta-lactamase (274 aa)
   
          0.609
Psed_6674
Hypothetical protein (784 aa)
   
          0.588
Psed_1019
DivIVA domain-containing protein (312 aa)
   
          0.586
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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