STRINGSTRING
Psed_5021 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5021" - CHAD domain-containing protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5021CHAD domain-containing protein (506 aa)    
Predicted Functional Partners:
Psed_5020
PHP domain-containing protein (340 aa)
              0.738
Psed_5022
D-lactate dehydrogenase (490 aa)
              0.724
Psed_5023
Amine oxidase (314 aa)
              0.709
Psed_0257
Hypothetical protein (372 aa)
   
          0.531
Psed_0992
Hypothetical protein (346 aa)
   
          0.524
Psed_5029
Histidine kinase (506 aa)
 
          0.452
Psed_3656
Hypothetical protein (175 aa)
   
          0.449
Psed_4932
FR47 domain-containing protein (242 aa)
   
          0.437
Psed_2377
GAF domain-containing protein (227 aa)
   
          0.427
Psed_2748
Hypothetical protein (354 aa)
   
          0.422
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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