STRINGSTRING
Psed_5023 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5023" - Amine oxidase in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5023Amine oxidase (314 aa)    
Predicted Functional Partners:
Psed_5022
D-lactate dehydrogenase (490 aa)
              0.840
Psed_5021
CHAD domain-containing protein (506 aa)
              0.709
Psed_5020
PHP domain-containing protein (340 aa)
              0.613
Psed_0614
Deoxyribodipyrimidine photo-lyase (462 aa)
 
   
  0.576
Psed_5025
4-hydroxyacetophenone monooxygenase (493 aa)
              0.472
menC
Mandelate racemase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB) (324 aa)
              0.472
Psed_1119
Hypothetical protein (346 aa)
   
          0.455
Psed_1218
Hypothetical protein (847 aa)
   
          0.414
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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