STRINGSTRING
Psed_5036 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5036" - Polyketide cyclase/dehydrase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5036Polyketide cyclase/dehydrase (148 aa)    
Predicted Functional Partners:
Psed_5037
o-succinylbenzoate--CoA ligase (553 aa)
              0.748
Psed_0184
Hypothetical protein (701 aa)
   
          0.699
Psed_5035
TetR family transcriptional regulator (192 aa)
              0.657
Psed_3510
Transcription elongation factor GreA (151 aa)
   
          0.593
Psed_3940
Hypothetical protein (331 aa)
   
          0.524
Psed_6197
Major facilitator superfamily protein (437 aa)
   
          0.493
Psed_3951
Hypothetical protein (594 aa)
   
          0.492
Psed_6311
Hypothetical protein (146 aa)
   
          0.487
Psed_4395
Hypothetical protein (128 aa)
   
          0.480
Psed_3157
Benzoylformate decarboxylase (524 aa)
   
          0.478
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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