STRINGSTRING
Psed_5047 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5047" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5047Hypothetical protein (340 aa)    
Predicted Functional Partners:
Psed_5045
Taurine-transporting AtPase (285 aa)
 
   
  0.941
Psed_5046
ABC transporter permease (276 aa)
 
   
  0.876
Psed_5048
UbiD family decarboxylase (482 aa)
              0.863
Psed_4191
Taurine-transporting AtPase (276 aa)
 
   
  0.816
Psed_5964
Taurine-transporting AtPase (263 aa)
 
   
  0.801
Psed_4511
Taurine-transporting AtPase (266 aa)
 
   
  0.795
Psed_3014
Taurine-transporting AtPase (256 aa)
 
   
  0.794
Psed_5049
GntR family transcriptional regulator (243 aa)
              0.744
Psed_5050
Major facilitator superfamily protein (383 aa)
              0.738
Psed_5051
LysR family transcriptional regulator (300 aa)
         
  0.710
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (7%) [HD]