STRINGSTRING
Psed_5051 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5051" - LysR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5051LysR family transcriptional regulator (300 aa)    
Predicted Functional Partners:
Psed_5050
Major facilitator superfamily protein (383 aa)
              0.810
Psed_5049
GntR family transcriptional regulator (243 aa)
              0.807
Psed_0351
LysR family transcriptional regulator (287 aa)
   
        0.748
Psed_5048
UbiD family decarboxylase (482 aa)
         
  0.732
Psed_5047
Hypothetical protein (340 aa)
         
  0.710
Psed_2197
LysR family transcriptional regulator (287 aa)
   
        0.693
Psed_5045
Taurine-transporting AtPase (285 aa)
 
          0.667
Psed_5054
Carbon-monoxide dehydrogenase (295 aa)
              0.628
Psed_5056
Carbon-monoxide dehydrogenase (788 aa)
              0.627
Psed_5055
Carbon-monoxide dehydrogenase (163 aa)
              0.627
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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