STRINGSTRING
Psed_5053 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5053" - Alpha/beta hydrolase in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5053Alpha/beta hydrolase (276 aa)    
Predicted Functional Partners:
Psed_1521
Carboxymuconolactone decarboxylase (134 aa)
 
     
    0.923
Psed_6460
Carboxymuconolactone decarboxylase (128 aa)
 
     
    0.918
Psed_3744
Carboxymuconolactone decarboxylase (146 aa)
 
     
    0.915
Psed_0778
3-oxoacid CoA-transferase subunit A (225 aa)
       
    0.901
Psed_0777
3-oxoacid CoA-transferase subunit B (221 aa)
       
    0.901
Psed_6063
Muconolactone delta-isomerase (95 aa)
         
    0.900
Psed_3704
Muconolactone delta-isomerase (91 aa)
         
    0.900
Psed_3095
Muconolactone Delta-isomerase (94 aa)
         
    0.900
Psed_0763
Muconolactone delta-isomerase (91 aa)
         
    0.900
Psed_0123
Carboxymuconolactone decarboxylase (190 aa)
         
    0.900
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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