STRINGSTRING
Psed_5062 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5062" - Crp/Fnr family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5062Crp/Fnr family transcriptional regulator (240 aa)    
Predicted Functional Partners:
Psed_3392
Guanylate cyclase (315 aa)
 
  0.925
Psed_6171
Guanylate cyclase (495 aa)
   
  0.911
Psed_5075
MIP family channel protein (272 aa)
   
 
  0.837
Psed_2223
MIP family channel protein (286 aa)
   
 
  0.837
Psed_2045
Major intrinsic protein (290 aa)
   
 
  0.837
Psed_4066
Type III restriction protein res subunit (1028 aa)
   
 
    0.795
Psed_5723
Type III restriction protein res subunit (553 aa)
   
 
    0.795
Psed_2991
Type III restriction protein res subunit (576 aa)
   
 
    0.795
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (347 aa)
   
 
  0.781
Psed_5286
Serine/threonine protein kinase (602 aa)
   
  0.780
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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