STRINGSTRING
Psed_5080 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5080" - Transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5080Transcriptional regulator (241 aa)    
Predicted Functional Partners:
Psed_5081
DoxX family protein (142 aa)
 
        0.927
Psed_4631
Transcriptional regulator (226 aa)
   
          0.692
kynU
Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively (405 aa)
 
          0.679
kynA
Tryptophan 23-dioxygenase; Catalyzes the oxidative cleavage of the L-tryptophan (L- Trp) pyrrole ring (281 aa)
              0.634
Psed_4243
PaaX family transcriptional regulator (292 aa)
 
          0.549
Psed_6078
Integrase protein (827 aa)
   
          0.502
Psed_5324
Hypothetical protein (254 aa)
   
          0.488
Psed_0241
Hypothetical protein (121 aa)
   
          0.485
Psed_3510
Transcription elongation factor GreA (151 aa)
 
          0.462
Psed_3400
Mannosyltransferase (534 aa)
 
     
  0.450
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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