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Psed_5104 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5104" - Regulatory protein MarR in Pseudonocardia dioxanivorans
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5104Regulatory protein MarR (155 aa)    
Predicted Functional Partners:
Psed_5105
Luciferase-like protein (370 aa)
              0.881
Psed_3309
Regulatory protein MarR (181 aa)
   
          0.563
gyrA
DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner (839 aa)
     
 
  0.474
Psed_3340
EmrB/QacA subfamily drug resistance transporter (501 aa)
         
  0.451
Psed_2661
EmrB/QacA subfamily drug resistance transporter (532 aa)
         
  0.451
Psed_2616
EmrB/QacA subfamily drug resistance transporter (548 aa)
         
  0.451
Psed_0838
EmrB/QacA subfamily drug resistance transporter (508 aa)
         
  0.451
Psed_0146
EmrB/QacA subfamily drug resistance transporter (962 aa)
         
  0.451
Psed_6192
Hypothetical protein (227 aa)
              0.412
Psed_5826
L-2,4-diaminobutyric acid acetyltransferase (176 aa)
              0.412
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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