STRINGSTRING
Psed_5109 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5109" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5109Hypothetical protein (288 aa)    
Predicted Functional Partners:
Psed_1912
Hypothetical protein (257 aa)
   
          0.696
Psed_4495
Hypothetical protein (141 aa)
   
          0.692
Psed_5108
Hypothetical protein (182 aa)
              0.629
glmS
Glucosamine--fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source (611 aa)
              0.620
Psed_6078
Integrase protein (827 aa)
   
          0.579
Psed_3284
Hypothetical protein (683 aa)
   
          0.542
Psed_1455
Glyoxalase/bleomycin resistance protein/dioxygenase (419 aa)
   
          0.515
Psed_4588
Hypothetical protein (117 aa)
   
          0.496
Psed_0632
Monooxygenase component MmoB/DmpM (125 aa)
   
          0.483
Psed_2937
HNH endonuclease (442 aa)
   
          0.482
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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