STRINGSTRING
Psed_5116 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5116" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5116Hypothetical protein (56 aa)    
Predicted Functional Partners:
Psed_5115
2-oxoglutarate dehydrogenase E1 (1263 aa)
              0.810
Psed_1986
Hypothetical protein (256 aa)
   
          0.772
Psed_1984
Radical SAM domain-containing protein (651 aa)
   
          0.761
Psed_2125
Ribonucleoside-diphosphate reductase (954 aa)
   
          0.712
Psed_0102
Hypothetical protein (72 aa)
   
          0.625
Psed_2796
Hypothetical protein (432 aa)
   
          0.612
Psed_2793
Type 12 methyltransferase (235 aa)
   
          0.600
Psed_3387
Transcriptional regulator (69 aa)
   
          0.597
Psed_5143
Peptidase S24/S26A/S26B, conserved region (109 aa)
   
          0.584
Psed_1783
vitamin-B12 independent methionine synthase (421 aa)
   
          0.576
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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