STRINGSTRING
Psed_5126 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5126" - Luciferase-like protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5126Luciferase-like protein (399 aa)    
Predicted Functional Partners:
Psed_1471
Limonene-12-epoxide hydrolase (128 aa)
         
    0.900
Psed_1470
Luciferase-like protein (337 aa)
 
          0.769
Psed_5127
Fis family transcriptional regulator (356 aa)
              0.756
Psed_4131
Luciferase-like protein (416 aa)
 
          0.746
Psed_5060
Luciferase-like protein (384 aa)
 
          0.727
Psed_4096
F420-dependent oxidoreductase (312 aa)
   
          0.664
Psed_2238
F420-dependent oxidoreductase (275 aa)
 
          0.642
Psed_1379
F420-dependent oxidoreductase (304 aa)
   
          0.611
Psed_4434
F420-dependent oxidoreductase (307 aa)
 
          0.524
Psed_5128
Short-chain dehydrogenase/reductase SDR (307 aa)
              0.521
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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