STRINGSTRING
Psed_5134 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5134" - PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5134PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase (925 aa)    
Predicted Functional Partners:
Psed_0674
GAF sensor-containing diguanylate cyclase (336 aa)
 
  0.889
Psed_4754
Nitrogen regulatory protein P-II (112 aa)
   
 
  0.853
Psed_4753
Nitrogen regulatory protein P-II (127 aa)
   
 
  0.853
Psed_4751
Nitrogen regulatory protein P-II (112 aa)
   
 
  0.853
Psed_2887
Diguanylate cyclase (455 aa)
 
          0.778
Psed_2886
Diguanylate cyclase (435 aa)
 
          0.778
Psed_0469
Diguanylate cyclase (286 aa)
 
          0.778
Psed_0548
PAS/PAC sensor protein (1401 aa)
   
 
  0.762
Psed_4731
RNA polymerase sigma 28 subunit FliA/WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (429 aa)
 
   
  0.750
Psed_4328
LuxR family transcriptional regulator (522 aa)
 
 
  0.723
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (8%) [HD]