STRINGSTRING
Psed_5155 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5155" - Anti-sigma factor in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5155Anti-sigma factor (114 aa)    
Predicted Functional Partners:
Psed_5156
ECF subfamily RNA polymerase sigma-24 subunit (264 aa)
         
  0.953
Psed_5649
Major facilitator superfamily protein (662 aa)
   
          0.729
Psed_5644
Hypothetical protein (159 aa)
   
          0.701
Psed_5157
ybaK/ebsC protein (182 aa)
         
  0.700
Psed_0454
Hypothetical protein (99 aa)
   
          0.693
Psed_1862
Hypothetical protein (177 aa)
   
          0.686
Psed_1116
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA (125 aa)
   
          0.666
Psed_1096
UvrD/REP helicase (1106 aa)
   
          0.622
Psed_0588
Helix-turn-helix domain-containing protein (149 aa)
   
          0.600
Psed_4708
GCN5-like N-acetyltransferase (277 aa)
   
          0.559
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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