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Psed_5156 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5156" - ECF subfamily RNA polymerase sigma-24 subunit in Pseudonocardia dioxanivorans
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5156ECF subfamily RNA polymerase sigma-24 subunit (264 aa)    
Predicted Functional Partners:
Psed_5155
Anti-sigma factor (114 aa)
         
  0.953
Psed_4275
ECF subfamily RNA polymerase sigma-24 subunit (224 aa)
   
          0.778
Psed_0291
ECF subfamily RNA polymerase sigma-24 subunit (203 aa)
   
          0.772
Psed_5157
ybaK/ebsC protein (182 aa)
              0.739
sigA
RpoD subfamily RNA polymerase sigma-70 subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (461 aa)
   
 
  0.625
Psed_2978
RpoD subfamily RNA polymerase sigma-70 subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (348 aa)
   
 
  0.625
rpoC
DNA-directed RNA polymerase subunit beta’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1300 aa)
     
 
  0.582
Psed_5625
ECF subfamily RNA polymerase sigma-24 subunit (202 aa)
   
     
  0.572
Psed_5707
Peptidase S1 and S6 chymotrypsin/Hap (299 aa)
   
   
  0.567
Psed_1591
Peptidase S1 and S6 chymotrypsin/Hap (567 aa)
   
   
  0.567
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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