STRINGSTRING
Psed_5165 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5165" - TetR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5165TetR family transcriptional regulator (190 aa)    
Predicted Functional Partners:
Psed_5166
Hypothetical protein (125 aa)
 
          0.910
Psed_5290
TetR family transcriptional regulator (196 aa)
   
          0.770
Psed_3860
TetR family transcriptional regulator (192 aa)
   
          0.721
Psed_0545
Cna B domain-containing protein (1071 aa)
   
          0.453
Psed_3881
Hypothetical protein (421 aa)
   
          0.441
Psed_1295
TetR family transcriptional regulator (205 aa)
   
          0.406
Psed_2270
Glyoxalase/bleomycin resistance protein/dioxygenase (138 aa)
   
          0.401
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (6%) [HD]