STRINGSTRING
Psed_5182 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5182" - Lipoprotein LpqB, beta-propeller domain-containing protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5182Lipoprotein LpqB, beta-propeller domain-containing protein (570 aa)    
Predicted Functional Partners:
Psed_5183
Histidine kinase (596 aa)
 
          0.886
Psed_1068
Hypothetical protein (417 aa)
   
          0.776
Psed_6514
Hypothetical protein (225 aa)
   
          0.775
Psed_5295
Hypothetical protein (440 aa)
   
          0.775
Psed_0334
Hypothetical protein (170 aa)
   
          0.773
Psed_4793
Hypothetical protein (191 aa)
   
          0.771
Psed_4572
Hypothetical protein (244 aa)
   
          0.769
Psed_1507
Hypothetical protein (185 aa)
   
          0.767
Psed_0608
Hypothetical protein (484 aa)
   
          0.767
Psed_0169
Hypothetical protein (407 aa)
   
          0.765
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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