STRINGSTRING
Psed_5197 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5197" - Cation diffusion facilitator family transporter in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5197Cation diffusion facilitator family transporter (309 aa)    
Predicted Functional Partners:
Psed_5198
Mannose-6-phosphate isomerase (405 aa)
              0.753
Psed_5199
Hypothetical protein (368 aa)
 
          0.717
Psed_5201
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II (451 aa)
   
        0.627
Psed_0525
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA (761 aa)
              0.571
Psed_5200
Hypothetical protein (71 aa)
              0.550
Psed_1097
UvrD/REP helicase (1224 aa)
   
        0.498
Psed_1096
UvrD/REP helicase (1106 aa)
   
        0.498
ung
uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine (226 aa)
   
        0.444
Psed_5202
Hypothetical protein (120 aa)
              0.439
Psed_0431
Beta-lactamase domain-containing protein (234 aa)
 
        0.436
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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