STRINGSTRING
Psed_5215 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5215" - Cell envelope-related transcriptional attenuator in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5215Cell envelope-related transcriptional attenuator (541 aa)    
Predicted Functional Partners:
Psed_5216
Hypothetical protein (238 aa)
   
        0.853
Psed_6514
Hypothetical protein (225 aa)
   
          0.660
Psed_5211
Mannose-1-phosphate guanylyltransferase (372 aa)
 
        0.651
Psed_5214
Family 2 glycosyl transferase (301 aa)
         
  0.650
Psed_1068
Hypothetical protein (417 aa)
   
        0.642
Psed_4766
Large Ala/Glu-rich protein (254 aa)
   
        0.641
Psed_4572
Hypothetical protein (244 aa)
   
          0.618
Psed_5295
Hypothetical protein (440 aa)
   
          0.607
Psed_1029
Hypothetical protein (236 aa)
   
          0.605
Psed_3637
Peptidoglycan glycosyltransferase (687 aa)
   
          0.601
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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