STRINGSTRING
Psed_5218 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5218" - Ribonuclease BN in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5218Ribonuclease BN (291 aa)    
Predicted Functional Partners:
Psed_5219
Hypothetical protein (389 aa)
              0.859
Psed_5992
Ribonuclease BN (359 aa)
   
          0.778
Psed_2172
Haloacid dehalogenase (208 aa)
   
          0.722
Psed_4277
Hypothetical protein (460 aa)
   
          0.702
Psed_4316
Hypothetical protein (200 aa)
   
          0.679
Psed_2148
Haloacid dehalogenase (243 aa)
   
          0.673
Psed_3091
Transcriptional activator domain-containing protein (850 aa)
   
          0.631
Psed_3155
ATP-binding protein (316 aa)
   
          0.614
Psed_5986
Hypothetical protein (144 aa)
   
          0.562
Psed_0375
TetR family transcriptional regulator (195 aa)
   
          0.554
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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