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Psed_5254 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5254" - BadM/Rrf2 family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5254BadM/Rrf2 family transcriptional regulator (148 aa)    
Predicted Functional Partners:
Psed_5255
butyryl-CoA dehydrogenase (445 aa)
              0.659
Psed_0938
Cystathionine beta-synthase (456 aa)
         
  0.629
Psed_3394
NifU family SUF system FeS assembly protein (152 aa)
   
   
  0.614
Psed_1775
Cysteine desulfurase (477 aa)
   
   
  0.587
Psed_5584
Nitric oxide dioxygenase (576 aa)
         
  0.577
Psed_4325
Nitric oxide dioxygenase (567 aa)
         
  0.577
Psed_5256
LytTr DNA-binding protein (468 aa)
              0.536
Psed_4555
Iron-sulfur cluster assembly accessory protein (124 aa)
   
   
  0.535
Psed_2704
phenylacetate-CoA oxygenase/reductase subunit PaaK (364 aa)
         
  0.498
Psed_1790
Ferredoxin (354 aa)
         
  0.498
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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