STRINGSTRING
Psed_5256 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5256" - LytTr DNA-binding protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5256LytTr DNA-binding protein (468 aa)    
Predicted Functional Partners:
Psed_6112
Phytochrome sensor protein (224 aa)
   
          0.711
Psed_5255
butyryl-CoA dehydrogenase (445 aa)
              0.710
Psed_2973
Dihydroxyacetone kinase subunit DhaL (209 aa)
   
      0.662
Psed_2972
Dihydroxyacetone kinase subunit DhaK (333 aa)
   
      0.662
Psed_5997
Fis family transcriptional regulator (503 aa)
   
          0.577
Psed_5254
BadM/Rrf2 family transcriptional regulator (148 aa)
              0.536
Psed_2081
Fis family transcriptional regulator (622 aa)
 
     
  0.493
Psed_5257
acyl-CoA dehydrogenase (443 aa)
              0.489
Psed_0739
Coenzyme PQQ biosynthesis protein PqqD (92 aa)
 
          0.441
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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