STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5256KEGG: gob:Gobs_2448 LytTr DNA-binding region; PFAM: LytTr, DNA-binding domain; SMART: LytTr, DNA-binding domain. (468 aa)    
Predicted Functional Partners:
Psed_5255
KEGG: xau:Xaut_2682 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal.
       0.631
Psed_6430
KEGG: lch:Lcho_4113 multi-sensor hybrid histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; Signal transduction response regulator, receiver domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain.
  
  
 0.612
Psed_0151
KEGG: sen:SACE_0115 sensor kinase, two-component system; PFAM: Signal transduction histidine kinase, internal region; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain.
 
 
 0.587
Psed_1159
PFAM: Methane/phenol/toluene hydroxylase; KEGG: rme:Rmet_1312 methane/phenol/toluene hydroxylase.
 
     0.580
Psed_3144
PFAM: Signal transduction histidine kinase, internal region; DNA ligase, ATP-dependent, central; KEGG: cai:Caci_5248 DNA polymerase LigD, ligase domain protein.
 
 
 0.575
Psed_1155
KEGG: rme:Rmet_1316 methane/phenol/toluene hydroxylase; PFAM: Methane/phenol/toluene hydroxylase; YHS.
 
   
 0.574
Psed_1439
PFAM: Methane/phenol/toluene hydroxylase; KEGG: reu:Reut_B5675 methane/phenol/toluene hydroxylase.
 
     0.569
Psed_1436
PFAM: Methane/phenol/toluene hydroxylase; KEGG: rme:Rmet_1316 methane/phenol/toluene hydroxylase.
 
   
 0.548
Psed_6112
KEGG: kfl:Kfla_6806 putative phytochrome sensor protein.
  
     0.548
Psed_0812
PFAM: Methane/phenol/toluene hydroxylase; KEGG: fra:Francci3_0215 methane/phenol/toluene hydroxylase.
 
     0.540
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.