STRINGSTRING
Psed_5300 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5300" - Serine-type D-Ala-D-Ala carboxypeptidase in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5300Serine-type D-Ala-D-Ala carboxypeptidase (411 aa)    
Predicted Functional Partners:
Psed_0116
Peptidoglycan glycosyltransferase (489 aa)
 
 
  0.958
murG
UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) (361 aa)
 
 
  0.932
Psed_6661
Peptidoglycan glycosyltransferase (754 aa)
       
  0.915
Psed_6492
Peptidoglycan glycosyltransferase (779 aa)
       
  0.915
Psed_3637
Peptidoglycan glycosyltransferase (687 aa)
       
  0.915
Psed_2439
Peptidoglycan glycosyltransferase (717 aa)
       
  0.915
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex (611 aa)
     
      0.853
Psed_6132
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase (471 aa)
       
  0.829
Psed_2805
Cell division protein FtsW (457 aa)
 
 
  0.730
Psed_0117
Cell cycle protein (487 aa)
 
 
  0.717
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (7%) [HD]