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Psed_5308 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5308" - prolyl-tRNA synthetase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5308prolyl-tRNA synthetase (167 aa)    
Predicted Functional Partners:
Psed_5310
Exodeoxyribonuclease III (268 aa)
              0.812
Psed_5309
Serine/threonine protein kinase (473 aa)
              0.805
Psed_0231
Peptidyl-dipeptidase Dcp (677 aa)
 
            0.734
Psed_5311
Hypothetical protein (113 aa)
              0.666
Psed_5312
Isocitrate dehydrogenase (404 aa)
              0.432
Psed_5307
FO synthase subunit 2 (866 aa)
              0.430
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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