STRINGSTRING
Psed_5329 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5329" - ATPase AAA in Pseudonocardia dioxanivorans
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5329ATPase AAA (710 aa)    
Predicted Functional Partners:
Psed_5330
Antigen 34 kDa family protein (262 aa)
              0.627
Psed_0165
Hypothetical protein (294 aa)
   
          0.627
Psed_0992
Hypothetical protein (346 aa)
   
          0.615
purH
Bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (519 aa)
              0.584
purN
Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate (213 aa)
              0.580
Psed_0987
Hypothetical protein (203 aa)
   
          0.572
Psed_5730
Hypothetical protein (59 aa)
   
          0.561
Psed_5578
LuxR family transcriptional regulator (932 aa)
   
          0.560
Psed_0401
Type II secretion system F domain-containing protein (243 aa)
   
          0.557
Psed_0990
ABC transporter integral membrane protein (283 aa)
   
          0.526
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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