STRINGSTRING
Psed_5333 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5333" - Alpha/beta hydrolase in Pseudonocardia dioxanivorans
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5333Alpha/beta hydrolase (318 aa)    
Predicted Functional Partners:
Psed_5628
Phospholipid/glycerol acyltransferase (489 aa)
 
      0.516
sucC
succinyl-CoA ligase (ADP-forming) subunit beta (390 aa)
              0.480
Psed_5331
succinyl-CoA synthetase subunit alpha (295 aa)
              0.479
nusG
NusG antitermination factor; Participates in transcription elongation, termination and antitermination (327 aa)
       
      0.452
Psed_4769
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second (1125 aa)
       
      0.452
Psed_5334
Peptidase M23 (250 aa)
              0.447
Psed_6504
NUDIX hydrolase (275 aa)
 
        0.441
Psed_1713
crotonyl-CoA reductase (443 aa)
   
        0.433
Psed_1986
Hypothetical protein (256 aa)
   
          0.422
Psed_3424
Hypothetical protein (235 aa)
   
          0.410
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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