STRINGSTRING
Psed_5343 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5343" - PspC domain-containing protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5343PspC domain-containing protein (442 aa)    
Predicted Functional Partners:
Psed_5342
Signal transduction histidine kinase (462 aa)
 
          0.926
Psed_5344
Hypothetical protein (77 aa)
              0.859
Psed_5341
LuxR family transcriptional regulator (227 aa)
 
          0.826
Psed_0142
RecB family nuclease (585 aa)
   
          0.756
Psed_1712
DivIVA domain-containing protein (304 aa)
   
          0.735
Psed_4803
Hypothetical protein (221 aa)
   
          0.666
Psed_0165
Hypothetical protein (294 aa)
   
          0.645
Psed_5297
Hypothetical protein (358 aa)
   
          0.606
Psed_5168
Hypothetical protein (197 aa)
   
          0.606
Psed_3569
Hypothetical protein (398 aa)
   
          0.606
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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