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Psed_5354 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5354" - ECF subfamily RNA polymerase sigma-24 subunit in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5354ECF subfamily RNA polymerase sigma-24 subunit (190 aa)    
Predicted Functional Partners:
Psed_5353
Hypothetical protein (415 aa)
              0.868
Psed_6676
ECF subfamily RNA polymerase sigma-24 subunit (182 aa)
   
     
  0.686
Psed_6524
ECF subfamily RNA polymerase sigma-24 subunit (244 aa)
   
          0.622
Psed_4803
Hypothetical protein (221 aa)
   
          0.586
Psed_3867
Hypothetical protein (166 aa)
   
          0.574
Psed_1737
Signal transduction histidine kinase (379 aa)
   
          0.568
Psed_5576
Hypothetical protein (170 aa)
   
          0.554
Psed_5372
Dienelactone hydrolase-like protein (276 aa)
 
          0.553
Psed_5171
Hypothetical protein (168 aa)
   
          0.523
Psed_1028
ECF subfamily RNA polymerase sigma-24 subunit (221 aa)
   
     
  0.505
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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