STRINGSTRING
Psed_5378 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5378" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5378Hypothetical protein (95 aa)    
Predicted Functional Partners:
Psed_5379
Hypothetical protein (103 aa)
 
          0.964
Psed_3426
Hypothetical protein (305 aa)
   
          0.673
Psed_5388
DNA translocase FtsK (1301 aa)
 
     
  0.638
Psed_5380
GCN5-like N-acetyltransferase (169 aa)
              0.610
Psed_0430
Hypothetical protein (247 aa)
   
          0.609
Psed_4564
Hypothetical protein (122 aa)
   
          0.608
Psed_3569
Hypothetical protein (398 aa)
   
          0.593
Psed_0705
UspA domain-containing protein (294 aa)
   
          0.545
Psed_2298
UspA domain-containing protein (297 aa)
   
          0.530
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (147 aa)
              0.522
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (9%) [HD]