STRINGSTRING
Psed_5496 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5496" - MerR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5496MerR family transcriptional regulator (116 aa)    
Predicted Functional Partners:
Psed_0121
Hypothetical protein (207 aa)
   
          0.663
Psed_4045
Cobalamin B12-binding domain-containing protein (357 aa)
   
          0.629
Psed_1077
Hypothetical protein (299 aa)
   
          0.566
Psed_6409
Hypothetical protein (316 aa)
   
          0.560
Psed_3811
Hypothetical protein (255 aa)
   
          0.552
Psed_3168
Hypothetical protein (375 aa)
   
          0.520
egtA
Glutamate/cysteine ligase protein; Catalyzes the synthesis of gamma-glutamylcysteine (gamma-GC). This compound is used as substrate for the biosynthesis of the low-molecular thiol compound ergothioneine (455 aa)
   
          0.512
Psed_4506
Hypothetical protein (58 aa)
   
          0.507
Psed_4009
UspA domain-containing protein (175 aa)
   
          0.498
Psed_6570
ABC transporter (255 aa)
   
          0.455
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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