STRINGSTRING
Psed_5506 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5506" - Luciferase-like protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5506Luciferase-like protein (334 aa)    
Predicted Functional Partners:
Psed_5207
F420-0-gamma-glutamyl ligase (454 aa)
 
   
  0.929
Psed_5507
long-chain-fatty-acid--CoA ligase (529 aa)
   
   
  0.871
Psed_1331
LPPG-FO 2-phospho-L-lactate transferase (323 aa)
 
   
  0.816
Psed_5208
LPPG-FO 2-phospho-L-lactate transferase (335 aa)
 
   
  0.815
Psed_5898
Luciferase-like protein (297 aa)
   
          0.773
Psed_1379
F420-dependent oxidoreductase (304 aa)
   
          0.765
Psed_4096
F420-dependent oxidoreductase (312 aa)
   
          0.763
fgd
Glucose-6-phosphate dehydrogenase, F420-dependent; Catalyzes the coenzyme F420-dependent oxidation of glucose 6-phosphate (G6P) to 6-phosphogluconolactone (334 aa)
   
          0.762
Psed_1473
F420-dependent oxidoreductase (309 aa)
   
          0.761
Psed_2479
Luciferase-like protein (299 aa)
   
          0.759
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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