STRINGSTRING
Psed_5529 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5529" - Transcription factor WhiB in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5529Transcription factor WhiB (94 aa)    
Predicted Functional Partners:
Psed_5534
Integrase protein (461 aa)
              0.859
Psed_5533
Hypothetical protein (69 aa)
              0.859
Psed_5532
Hypothetical protein (559 aa)
              0.859
Psed_5531
DNA translocase FtsK (497 aa)
              0.859
Psed_5530
Hypothetical protein (55 aa)
              0.859
Psed_5528
Hypothetical protein (132 aa)
              0.859
Psed_0961
Hypothetical protein (252 aa)
   
          0.697
Psed_0947
Hypothetical protein (203 aa)
   
          0.632
Psed_5527
Hypothetical protein (142 aa)
              0.578
Psed_4564
Hypothetical protein (122 aa)
   
          0.562
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (11%) [HD]