STRINGSTRING
Psed_5533 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5533" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5533Hypothetical protein (69 aa)    
Predicted Functional Partners:
Psed_5534
Integrase protein (461 aa)
 
          0.970
Psed_5531
DNA translocase FtsK (497 aa)
              0.860
Psed_5532
Hypothetical protein (559 aa)
              0.859
Psed_5530
Hypothetical protein (55 aa)
              0.859
Psed_5529
Transcription factor WhiB (94 aa)
              0.859
Psed_5528
Hypothetical protein (132 aa)
              0.859
Psed_3904
CO dehydrogenase maturation factor-like protein (316 aa)
   
          0.705
Psed_5525
Hypothetical protein (273 aa)
 
          0.613
Psed_4284
Extradiol ring-cleavage dioxygenase class III protein subunit B (357 aa)
   
          0.607
Psed_5527
Hypothetical protein (142 aa)
              0.578
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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