STRINGSTRING
Psed_5542 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5542" - Winged helix family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5542Winged helix family transcriptional regulator (999 aa)    
Predicted Functional Partners:
Psed_3913
LuxR family transcriptional regulator (1027 aa)
   
          0.768
Psed_1706
LuxR family transcriptional regulator (940 aa)
   
          0.746
Psed_5541
AraC family transcriptional regulator (275 aa)
              0.709
Psed_3245
ATPase-like protein (1005 aa)
   
          0.637
Psed_5545
Hypothetical protein (117 aa)
              0.633
Psed_5544
Hypothetical protein (185 aa)
              0.633
Psed_5543
Hypothetical protein (118 aa)
              0.633
Psed_5889
LuxR family transcriptional regulator (899 aa)
   
          0.611
Psed_4315
LuxR family transcriptional regulator (888 aa)
   
          0.606
Psed_6299
LuxR family transcriptional regulator (932 aa)
   
          0.552
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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