STRINGSTRING
Psed_5543 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5543" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5543Hypothetical protein (118 aa)    
Predicted Functional Partners:
Psed_5545
Hypothetical protein (117 aa)
 
          0.880
Psed_5544
Hypothetical protein (185 aa)
              0.859
Psed_5542
Winged helix family transcriptional regulator (999 aa)
              0.633
Psed_2286
Hypothetical protein (516 aa)
   
          0.611
Psed_3442
Hypothetical protein (388 aa)
   
          0.563
Psed_6438
Hemerythrin HHE cation binding domain-containing protein (279 aa)
   
          0.543
Psed_5541
AraC family transcriptional regulator (275 aa)
              0.530
Psed_5050
Major facilitator superfamily protein (383 aa)
   
          0.487
Psed_1139
Hypothetical protein (348 aa)
   
          0.479
Psed_2611
ATPase AAA (743 aa)
   
          0.471
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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